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Scope

There is consensus across industry that software used for regulatory submission needs to be validated. However, there are few industry accepted guidelines on what is specifically required to meet the bar of validation for Open Source tools and user-contributed extensions, specifically R and R packages.

There are two deliverables from this project: a White Paper and an R package. The White Paper will serve as a reference for industry on how to perform validation for user-contributed extensions of programming software. It will detail the elements that need to be met for the extension to be validated, and ways to document the process in a reusable, efficient, and sharable fashion. The R package will be developed to provide the tools and guidance for validating an R package. It will show how to take advantage of the tools that exist in the R language, and it will be based on the White Paper to ensure the baseline requirements are achieved.

With these tools, there will be a standard to reference on how to approach validation of extensions to the R language. Additionally, by demonstrating how to perform validation, the framework can be more generally applied to software extensions in other languages.


Project Lead

Email

Eli Miller
Ellis Hughes
ellishughes@live.com


Key Milestones 

ObjectiveTimeline
Complete the Docker POC Project Q4 2020 Kick off the Docker pilot for a real submission Q4 2020

White Paper on best practices for interactive analyses for decision making & submissions

Develop and submit a white paper detailing the elements that would be required for any open source technologies user-contributed extensions.

Q3 2021 

Develop an R package that would provide the necessary tools and guide the user through the necessary steps to achieve a validated R package. 

Q4 2021 
Q4 2020 

Status
colourBlue
titleCurrent Status

Continuing to write Constructing sections of the White Paper, awaiting feedback from the FDA on the POC submission. 

Project Members 

Name Organisation 

Catherine Xiao

Gilead

Douglas Warfield

Ireview

Eric Herbel

Industry

Gaoyang Li 

Bayer

Hari J Vardhan 

Chiltern

Iraj Mohebalian  

Bayer

Karl Brand 

BayerMaria Dalton GSK

Mary Nilsson 

Eli LillyMominul Islam 

Sarepta

Nagadip Rao 

Aiming Yang

Merck

Hanming Tu

Frontage

Katherine  Ostbye  

(SCHARP) Fred Hutchinson

Marie Vendettuoli

(SCHARP) Fred Hutchinson

Mike Stackhouse

Atorus Research

Paul  Stutzman 

(SCHARP) Fred Hutchinson

Peyman Eshghi

GSK
Philip Bowsher

RStudio

Rafael Kuttner(SCHARP) Fred Hutchinson

Shrishaila Patil

Navitas Life Sciences
Ting Zhang

Sanofi

Yoni

Industry 

Elissen


Volunteer Today

Our project always welcomes new members to collaborate in an open, transparent and non-competitive project. If you are interested in joining please contact workinggroups@phuse.eu.