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Project Scope

Analysis scripts for SEND data would be valuable tools. Can existing clinical scripts be used to help develop Nonclinical scripts? What is the best process for prioritising, developing and releasing analysis scripts for SEND data?



Project LeadsEmail
Kevin Snyder
(
, FDA
) 

kevin.snyder@fda.hhs.gov

William Houser
(
, Bristol Myers Squibb
)

william.houser@bms.com

Katie Warren (
Alex Pearce, PHUSE Project Assistant
)
katie@phuse.globalObjectives & DeliverablesTimelinesCreate software that generates SEND data useful for demonstrating data visualisation tools, testing software that receives data from the standard, especially as standards are approaching finalisation. 2021Create large enough data sets for testing visualisation for data loading tools for capacity testing 2021Create example code to show: R script creation of XPT files, R script reading of the standard, R script reading of CT files. 2021 

Project Members 

Organisation Anthony FataSNBL

Atul Mishra

Pfizer

Bill Houser

Bristol Myers Squibb

Bill Varady

Boehringer Ingelheim

Bob Friedman

Xybion

Dhamodharan Ravindiran

Industry

Drashtti Vasant

BayerElaine Thompson FDAEli MillerAtorus ResearchFred MuraPDS Life Sciences

Project Members 

Organisation 

Hanming Tu

Frontage Laboratories

Jarad Slain

MPI Research

Kevin Cahill

EPL

Kevin Snyder

FDAMichael DeNieu LabcorpMichael RosentreterBayerRaymond Deheer Charles RiverSabbir AhmedFDASusan ButlerFDA

Sweta Khare

XybionWenxian WengBristol Myers Squibb

Alexandra@phuse.global



Status
colourBlue
titleCurrent Status

Q3/42021
  • Presented SEND igR package at the PHUSE US Connect.

    • Q1 2024

    Collaboration with OpenStudyBuilder has been initiated to orient the application to generate nonclinical study protocols. An update will be provided on the progress towards this end and tasks will be assigned to progress development in this direction.

    Utilised feedback from validator results to improve the quality of generated SEND datasets. 



    Resources 

    Coding StandardsLearning R for SAS programmersMore R Resources
    Folder StructureR FOR SAS AND SPSS USERSCheat Sheets for R Concepts and Packages
    Name ConventionSASxport Users GuideUsing R for Data Analysis and Graphics
    Metadata TagsR for SAS programmers: It’s different, but friendly
    Simple Index


    Learning R for SAS programmersMore R Resources
    R FOR SAS AND SPSS USERSCheat Sheets for R Concepts and Packages
    SASxport Users GuideUsing R for Data Analysis and Graphics
    R for SAS programmers: It’s different, but friendly



    Other

    Getting GitHub script repository access for Contributors

    1. Create account on GitHub site site https://github.com/
    2. Send Hanming Tu (htu@frontagelab.com) your GitHub ID asking to be a contributor.
    3. Hanming will send an invitation that will come as an email from "GitHub"
    4. If you don't see the invitation link in your email, you can accept the invitation from from https://github.com/orgs/phuse-org/invitation
    5. You can download/clone a whole repository to your computer if you have a client for the repository. You can get either TortoiseSVN (https://www.wikihow.com/Install-and-TortoiseSVN-and-Make-Your-First-Repository-Change) or GitHub desktop (https://desktop.github.com/). See the useful links at at https://github.com/phuse-org/phuse-scripts/wiki/Read-Me-First-(Google-Code).
    6. Read other getting-started information here: https://github.com/phuse-org/phuse-scripts/wiki/Read-Me-First-%28Google-Code%29
    7. To see a list of contributed scripts
      1. get into GitHub and select the tab for the Wiki
      2. Look at the list on the right side and open the link for Simple Index
    PHUSE group focused on Good Programming Practice Guidance
    Safety Pharmacology Pilot
    PHUSE SEND Data Factory Design V2
    Converter tools between xpt and csv

    Group SEND